STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001117annotation not available (124 aa)    
Predicted Functional Partners:
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
    
  0.922
P4HA3
Prolyl 4-hydroxylase subunit alpha 3.
    
   0.888
ENSCAPP00000014504
annotation not available
    
 0.824
ENSCAPP00000015456
annotation not available
    
 0.808
JAK1
Janus kinase 1.
    
  0.794
XRCC6
X-ray repair cross complementing 6.
    
  0.766
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
  0.750
HDAC3
Histone deacetylase 3.
    
 0.712
CDCP1
CUB domain containing protein 1.
      
 0.691
DNTT
DNA nucleotidylexotransferase.
    
 
 0.689
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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