Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001121annotation not available (267 aa)    
Predicted Functional Partners:
CACNA1F
Calcium voltage-gated channel subunit alpha1 F.
     
 0.887
ENSCAPP00000004646
annotation not available
   
 0.809
ROBO2
Roundabout guidance receptor 2.
   
 0.809
ROBO4
Roundabout guidance receptor 4.
   
 0.809
ENSCAPP00000012111
annotation not available
   
 0.809
ABL2
ABL proto-oncogene 2, non-receptor tyrosine kinase.
    
  0.714
ABL1
ABL proto-oncogene 1, non-receptor tyrosine kinase.
    
  0.714
PODN
Podocan.
    
 0.704
CABP4
Calcium binding protein 4.
    
 
 0.692
EGFLAM
EGF like, fibronectin type III and laminin G domains.
    
 0.684
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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