Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C1QL4Complement C1q like 4. (140 aa)    
Predicted Functional Partners:
ENSCAPP00000011600
annotation not available
   
 0.630
ITGA1
Integrin subunit alpha 1.
    
 0.588
COL6A2
Collagen type VI alpha 2 chain.
   
 0.586
ENSCAPP00000016185
annotation not available
    
 0.572
ITGB5
Integrin subunit beta 5.
    
 0.572
ITGAV
Integrin subunit alpha V.
    
 0.567
ITGB6
Integrin subunit beta 6.
    
 0.550
ITGB4
Integrin subunit beta 4.
    
 0.550
ITGA5
Integrin subunit alpha 5.
    
 0.549
LAMA2
Laminin subunit alpha 2.
    
 0.547
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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