MYOM2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

MYOM2

Myomesin 2. (1460 aa)

Predicted Functional Partners:

MYOM3

0.954

MYOM1

0.950

ENSCAPP00000015287

0.926

SRL

0.915

ACTN3

0.914

MYSM1

0.897

SMARCB1

0.830

PBRM1

0.821

ACTL6A

0.820

CASQ2

0.812

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6A	ACTN3	ENSCAPP00000013540	ENSCAPP00000004725	Actin like 6A.	Actinin alpha 3 (gene/pseudogene).	0.419
ACTL6A	MYOM2	ENSCAPP00000013540	ENSCAPP00000001128	Actin like 6A.	Myomesin 2.	0.820
ACTL6A	MYSM1	ENSCAPP00000013540	ENSCAPP00000004064	Actin like 6A.	Myb like, SWIRM and MPN domains 1.	0.947
ACTL6A	PBRM1	ENSCAPP00000013540	ENSCAPP00000007524	Actin like 6A.	Polybromo 1.	0.999
ACTL6A	SMARCB1	ENSCAPP00000013540	ENSCAPP00000002532	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.999
ACTN3	ACTL6A	ENSCAPP00000004725	ENSCAPP00000013540	Actinin alpha 3 (gene/pseudogene).	Actin like 6A.	0.419
ACTN3	CASQ2	ENSCAPP00000004725	ENSCAPP00000003971	Actinin alpha 3 (gene/pseudogene).	Calsequestrin 2.	0.706
ACTN3	MYOM2	ENSCAPP00000004725	ENSCAPP00000001128	Actinin alpha 3 (gene/pseudogene).	Myomesin 2.	0.914
ACTN3	MYOM3	ENSCAPP00000004725	ENSCAPP00000009774	Actinin alpha 3 (gene/pseudogene).	Myomesin 3.	0.439
CASQ2	ACTN3	ENSCAPP00000003971	ENSCAPP00000004725	Calsequestrin 2.	Actinin alpha 3 (gene/pseudogene).	0.706
CASQ2	ENSCAPP00000015287	ENSCAPP00000003971	ENSCAPP00000015287	Calsequestrin 2.	annotation not available	0.884
CASQ2	MYOM2	ENSCAPP00000003971	ENSCAPP00000001128	Calsequestrin 2.	Myomesin 2.	0.812
CASQ2	MYOM3	ENSCAPP00000003971	ENSCAPP00000009774	Calsequestrin 2.	Myomesin 3.	0.798
CASQ2	MYSM1	ENSCAPP00000003971	ENSCAPP00000004064	Calsequestrin 2.	Myb like, SWIRM and MPN domains 1.	0.787
CASQ2	SRL	ENSCAPP00000003971	ENSCAPP00000000861	Calsequestrin 2.	Sarcalumenin.	0.936
ENSCAPP00000015287	CASQ2	ENSCAPP00000015287	ENSCAPP00000003971	annotation not available	Calsequestrin 2.	0.884
ENSCAPP00000015287	MYOM1	ENSCAPP00000015287	ENSCAPP00000011484	annotation not available	Myomesin 1.	0.479
ENSCAPP00000015287	MYOM2	ENSCAPP00000015287	ENSCAPP00000001128	annotation not available	Myomesin 2.	0.926
ENSCAPP00000015287	MYOM3	ENSCAPP00000015287	ENSCAPP00000009774	annotation not available	Myomesin 3.	0.768
ENSCAPP00000015287	SRL	ENSCAPP00000015287	ENSCAPP00000000861	annotation not available	Sarcalumenin.	0.902