TENT5C protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TENT5C

Terminal nucleotidyltransferase 5C. (391 aa)

Predicted Functional Partners:

ENSCAPP00000011099

0.942

ENSCAPP00000000974

0.854

CEP192

0.671

FNDC3A

0.668

MST1R

0.657

SF1

0.595

SPATC1L

0.589

FAM133B

0.585

SUN5

0.580

ENSCAPP00000005282

0.570

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP192	ENSCAPP00000000974	ENSCAPP00000017614	ENSCAPP00000000974	Centrosomal protein 192.	annotation not available	0.998
CEP192	TENT5C	ENSCAPP00000017614	ENSCAPP00000001140	Centrosomal protein 192.	Terminal nucleotidyltransferase 5C.	0.671
ENSCAPP00000000974	CEP192	ENSCAPP00000000974	ENSCAPP00000017614	annotation not available	Centrosomal protein 192.	0.998
ENSCAPP00000000974	SUN5	ENSCAPP00000000974	ENSCAPP00000015129	annotation not available	Sad1 and UNC84 domain containing 5.	0.496
ENSCAPP00000000974	TENT5C	ENSCAPP00000000974	ENSCAPP00000001140	annotation not available	Terminal nucleotidyltransferase 5C.	0.854
ENSCAPP00000005282	TENT5C	ENSCAPP00000005282	ENSCAPP00000001140	annotation not available	Terminal nucleotidyltransferase 5C.	0.570
ENSCAPP00000011099	TENT5C	ENSCAPP00000011099	ENSCAPP00000001140	annotation not available	Terminal nucleotidyltransferase 5C.	0.942
FAM133B	TENT5C	ENSCAPP00000015780	ENSCAPP00000001140	Family with sequence similarity 133 member B.	Terminal nucleotidyltransferase 5C.	0.585
FNDC3A	TENT5C	ENSCAPP00000017352	ENSCAPP00000001140	Fibronectin type III domain containing 3A.	Terminal nucleotidyltransferase 5C.	0.668
MST1R	TENT5C	ENSCAPP00000010541	ENSCAPP00000001140	Macrophage stimulating 1 receptor.	Terminal nucleotidyltransferase 5C.	0.657
SF1	TENT5C	ENSCAPP00000009263	ENSCAPP00000001140	Splicing factor 1.	Terminal nucleotidyltransferase 5C.	0.595
SPATC1L	SUN5	ENSCAPP00000014533	ENSCAPP00000015129	Spermatogenesis and centriole associated 1 like.	Sad1 and UNC84 domain containing 5.	0.576
SPATC1L	TENT5C	ENSCAPP00000014533	ENSCAPP00000001140	Spermatogenesis and centriole associated 1 like.	Terminal nucleotidyltransferase 5C.	0.589
SUN5	ENSCAPP00000000974	ENSCAPP00000015129	ENSCAPP00000000974	Sad1 and UNC84 domain containing 5.	annotation not available	0.496
SUN5	SPATC1L	ENSCAPP00000015129	ENSCAPP00000014533	Sad1 and UNC84 domain containing 5.	Spermatogenesis and centriole associated 1 like.	0.576
SUN5	TENT5C	ENSCAPP00000015129	ENSCAPP00000001140	Sad1 and UNC84 domain containing 5.	Terminal nucleotidyltransferase 5C.	0.580
TENT5C	CEP192	ENSCAPP00000001140	ENSCAPP00000017614	Terminal nucleotidyltransferase 5C.	Centrosomal protein 192.	0.671
TENT5C	ENSCAPP00000000974	ENSCAPP00000001140	ENSCAPP00000000974	Terminal nucleotidyltransferase 5C.	annotation not available	0.854
TENT5C	ENSCAPP00000005282	ENSCAPP00000001140	ENSCAPP00000005282	Terminal nucleotidyltransferase 5C.	annotation not available	0.570
TENT5C	ENSCAPP00000011099	ENSCAPP00000001140	ENSCAPP00000011099	Terminal nucleotidyltransferase 5C.	annotation not available	0.942