Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001144annotation not available (165 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
   
 0.997
TENT4A
Terminal nucleotidyltransferase 4A.
    
 0.990
ZCCHC8
Zinc finger CCHC-type containing 8.
     
 0.957
EXOSC10
Exosome component 10.
   
 0.950
ZCCHC14
Zinc finger CCHC-type containing 14.
   
 0.898
RPL8
Ribosomal protein L8.
    
   0.894
EXOSC5
Exosome component 5.
   
 0.891
PARP12
poly(ADP-ribose) polymerase family member 12.
    
  0.867
ENSCAPP00000009045
annotation not available
   
   0.860
ENSCAPP00000014194
annotation not available
   
   0.860
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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