FCN1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FCN1

Ficolin 1. (319 aa)

Predicted Functional Partners:

ENSCAPP00000009206

0.987

ENSCAPP00000009416

0.977

MBL2

0.966

C1R

0.960

C1S

0.947

PLAU

0.929

F7

0.918

ENSCAPP00000000830

0.909

SPCS3

0.907

SPCS2

0.906

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1R	C1S	ENSCAPP00000003652	ENSCAPP00000003535	Complement C1r.	Complement C1s.	0.999
C1R	ENSCAPP00000000830	ENSCAPP00000003652	ENSCAPP00000000830	Complement C1r.	annotation not available	0.422
C1R	FCN1	ENSCAPP00000003652	ENSCAPP00000001167	Complement C1r.	Ficolin 1.	0.960
C1R	MBL2	ENSCAPP00000003652	ENSCAPP00000004472	Complement C1r.	Mannose binding lectin 2.	0.945
C1S	C1R	ENSCAPP00000003535	ENSCAPP00000003652	Complement C1s.	Complement C1r.	0.999
C1S	ENSCAPP00000000830	ENSCAPP00000003535	ENSCAPP00000000830	Complement C1s.	annotation not available	0.422
C1S	FCN1	ENSCAPP00000003535	ENSCAPP00000001167	Complement C1s.	Ficolin 1.	0.947
C1S	MBL2	ENSCAPP00000003535	ENSCAPP00000004472	Complement C1s.	Mannose binding lectin 2.	0.946
ENSCAPP00000000830	C1R	ENSCAPP00000000830	ENSCAPP00000003652	annotation not available	Complement C1r.	0.422
ENSCAPP00000000830	C1S	ENSCAPP00000000830	ENSCAPP00000003535	annotation not available	Complement C1s.	0.422
ENSCAPP00000000830	ENSCAPP00000009206	ENSCAPP00000000830	ENSCAPP00000009206	annotation not available	annotation not available	0.422
ENSCAPP00000000830	ENSCAPP00000009416	ENSCAPP00000000830	ENSCAPP00000009416	annotation not available	annotation not available	0.422
ENSCAPP00000000830	F7	ENSCAPP00000000830	ENSCAPP00000015640	annotation not available	Coagulation factor VII.	0.924
ENSCAPP00000000830	FCN1	ENSCAPP00000000830	ENSCAPP00000001167	annotation not available	Ficolin 1.	0.909
ENSCAPP00000000830	MBL2	ENSCAPP00000000830	ENSCAPP00000004472	annotation not available	Mannose binding lectin 2.	0.911
ENSCAPP00000000830	PLAU	ENSCAPP00000000830	ENSCAPP00000017714	annotation not available	Plasminogen activator, urokinase.	0.999
ENSCAPP00000000830	SPCS2	ENSCAPP00000000830	ENSCAPP00000005096	annotation not available	Signal peptidase complex subunit 2.	0.912
ENSCAPP00000000830	SPCS3	ENSCAPP00000000830	ENSCAPP00000016024	annotation not available	Signal peptidase complex subunit 3.	0.912
ENSCAPP00000009206	ENSCAPP00000000830	ENSCAPP00000009206	ENSCAPP00000000830	annotation not available	annotation not available	0.422
ENSCAPP00000009206	ENSCAPP00000009416	ENSCAPP00000009206	ENSCAPP00000009416	annotation not available	annotation not available	0.997