Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001168annotation not available (581 aa)    
Predicted Functional Partners:
TP53
Tumor protein p53.
   
 0.962
ANAPC5
Anaphase promoting complex subunit 5.
   
  0.945
L3MBTL2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.884
RB1
RB transcriptional corepressor 1.
    
 0.877
L3MBTL3
L3MBTL histone methyl-lysine binding protein 3.
    
  0.874
SAMD13
Sterile alpha motif domain containing 13.
    
  0.808
CBX4
Chromobox 4.
    
 0.788
MBTD1
Mbt domain containing 1.
    
 0.787
ENSCAPP00000015542
annotation not available
    
 0.754
ENSCAPP00000005404
annotation not available
    
 0.752
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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