STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFFLRing finger and FYVE like domain containing E3 ubiquitin protein ligase. (384 aa)    
Predicted Functional Partners:
TP53
Tumor protein p53.
    
  0.605
DNAJB12
DnaJ heat shock protein family (Hsp40) member B12.
      
 0.559
MYRF
Myelin regulatory factor.
      
 0.551
RNF34
Ring finger protein 34.
  
 
  
0.544
TNP1
Transition protein 1.
      
 0.543
ENSCAPP00000000972
annotation not available
    
 
 0.525
ENSCAPP00000008606
annotation not available
    
 
 0.525
ENSCAPP00000006804
annotation not available
    
   0.472
TPRA1
Transmembrane protein adipocyte associated 1.
      
 0.437
DNAJB14
DnaJ heat shock protein family (Hsp40) member B14.
      
 0.429
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.