CIDEB protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CIDEB

Cell death inducing DFFA like effector b. (168 aa)

Predicted Functional Partners:

KLHL12

0.960

APOB

0.952

SEC13

0.944

SEC24D

0.943

ENSCAPP00000011033

0.942

SEC24A

0.941

SAR1B

0.941

SEC24B

0.940

SAR1A

0.925

ENSCAPP00000008248

0.913

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	CIDEB	ENSCAPP00000013823	ENSCAPP00000001189	Apolipoprotein B.	Cell death inducing DFFA like effector b.	0.952
APOB	SAR1A	ENSCAPP00000013823	ENSCAPP00000002602	Apolipoprotein B.	Secretion associated Ras related GTPase 1A.	0.692
APOB	SAR1B	ENSCAPP00000013823	ENSCAPP00000014974	Apolipoprotein B.	Secretion associated Ras related GTPase 1B.	0.692
CIDEB	APOB	ENSCAPP00000001189	ENSCAPP00000013823	Cell death inducing DFFA like effector b.	Apolipoprotein B.	0.952
CIDEB	ENSCAPP00000008248	ENSCAPP00000001189	ENSCAPP00000008248	Cell death inducing DFFA like effector b.	annotation not available	0.913
CIDEB	ENSCAPP00000011033	ENSCAPP00000001189	ENSCAPP00000011033	Cell death inducing DFFA like effector b.	annotation not available	0.942
CIDEB	KLHL12	ENSCAPP00000001189	ENSCAPP00000006276	Cell death inducing DFFA like effector b.	Kelch like family member 12.	0.960
CIDEB	SAR1A	ENSCAPP00000001189	ENSCAPP00000002602	Cell death inducing DFFA like effector b.	Secretion associated Ras related GTPase 1A.	0.925
CIDEB	SAR1B	ENSCAPP00000001189	ENSCAPP00000014974	Cell death inducing DFFA like effector b.	Secretion associated Ras related GTPase 1B.	0.941
CIDEB	SEC13	ENSCAPP00000001189	ENSCAPP00000006799	Cell death inducing DFFA like effector b.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.944
CIDEB	SEC24A	ENSCAPP00000001189	ENSCAPP00000014695	Cell death inducing DFFA like effector b.	SEC24 homolog A, COPII coat complex component.	0.941
CIDEB	SEC24B	ENSCAPP00000001189	ENSCAPP00000008033	Cell death inducing DFFA like effector b.	SEC24 homolog B, COPII coat complex component.	0.940
CIDEB	SEC24D	ENSCAPP00000001189	ENSCAPP00000009959	Cell death inducing DFFA like effector b.	SEC24 homolog D, COPII coat complex component.	0.943
ENSCAPP00000008248	CIDEB	ENSCAPP00000008248	ENSCAPP00000001189	annotation not available	Cell death inducing DFFA like effector b.	0.913
ENSCAPP00000008248	ENSCAPP00000011033	ENSCAPP00000008248	ENSCAPP00000011033	annotation not available	annotation not available	0.997
ENSCAPP00000008248	KLHL12	ENSCAPP00000008248	ENSCAPP00000006276	annotation not available	Kelch like family member 12.	0.997
ENSCAPP00000008248	SAR1A	ENSCAPP00000008248	ENSCAPP00000002602	annotation not available	Secretion associated Ras related GTPase 1A.	0.988
ENSCAPP00000008248	SAR1B	ENSCAPP00000008248	ENSCAPP00000014974	annotation not available	Secretion associated Ras related GTPase 1B.	0.989
ENSCAPP00000008248	SEC13	ENSCAPP00000008248	ENSCAPP00000006799	annotation not available	SEC13 homolog, nuclear pore and COPII coat complex component.	0.998
ENSCAPP00000008248	SEC24A	ENSCAPP00000008248	ENSCAPP00000014695	annotation not available	SEC24 homolog A, COPII coat complex component.	0.998