STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A39Solute carrier family 25 member 39. (298 aa)    
Predicted Functional Partners:
RUNDC3A
RUN domain containing 3A.
      
 0.666
FKBP8
FKBP prolyl isomerase 8.
   
  
 0.638
RUNDC3B
RUN domain containing 3B.
      
 0.569
ENSCAPP00000008829
annotation not available
      
 0.566
ENSCAPP00000009147
annotation not available
    
   0.565
PUM2
Pumilio RNA binding family member 2.
    
   0.565
TUBB6
Tubulin beta 6 class V.
      
 0.558
CNOT4
CCR4-NOT transcription complex subunit 4.
      
 0.524
TMEM14C
Transmembrane protein 14C.
   
  
 0.479
STRADB
STE20 related adaptor beta.
   
  
 0.474
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.