Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM8Tripartite motif containing 8. (360 aa)    
Predicted Functional Partners:
ENSCAPP00000013086
annotation not available
    
 0.961
TRIM66
Tripartite motif containing 66.
      
 0.881
ENSCAPP00000016338
annotation not available
    
 0.780
TRIM32
Tripartite motif containing 32.
      
 0.647
TRIM23
Tripartite motif containing 23.
    
 0.623
TRIM3
Tripartite motif containing 3.
    
 
 0.582
TRAT1
T cell receptor associated transmembrane adaptor 1.
      
 0.578
TRIM44
Tripartite motif containing 44.
    
 0.549
MYD88
MYD88 innate immune signal transduction adaptor.
    
 0.532
ENSCAPP00000007274
annotation not available
    
 0.516
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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