Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CABCOCO1Ciliary associated calcium binding coiled-coil 1. (270 aa)    
Predicted Functional Partners:
RPA1
Replication protein A1.
    
 0.760
PHF13
PHD finger protein 13.
    
 0.729
H6PD
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
   
 
 0.728
CPLX4
Complexin 4.
      
 0.676
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.669
TCTE1
T-complex-associated-testis-expressed 1.
    
 0.650
LIN54
Lin-54 DREAM MuvB core complex component.
    
 0.650
TESMIN
Testis expressed metallothionein like protein.
    
 0.650
MYBL2
MYB proto-oncogene like 2.
    
 0.614
MYBL1
MYB proto-oncogene like 1.
    
 0.614
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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