Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF2IRD1GTF2I repeat domain containing 1. (1023 aa)    
Predicted Functional Partners:
HDAC3
Histone deacetylase 3.
    
 
 0.807
NSUN5
NOP2/Sun RNA methyltransferase 5.
      
 0.745
ENSCAPP00000004258
annotation not available
    
 
 0.668
ENSCAPP00000007617
annotation not available
    
 
 0.668
CLIP2
CAP-Gly domain containing linker protein 2.
      
 0.659
FKBP6
FKBP prolyl isomerase 6.
      
 0.622
ZMYM2
Zinc finger MYM-type containing 2.
    
 
 0.618
RFC2
Replication factor C subunit 2.
      
 0.618
ENSCAPP00000013410
annotation not available
    
   0.613
FKBP10
FKBP prolyl isomerase 10.
      
 0.604
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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