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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GZF1GDNF inducible zinc finger protein 1. (716 aa)    
Predicted Functional Partners:
KIZ
Kizuna centrosomal protein.
    
 0.656
ACSS1
acyl-CoA synthetase short chain family member 1.
    
 0.618
KAT14
Lysine acetyltransferase 14.
    
 
 0.596
NXT1
Nuclear transport factor 2 like export factor 1.
     
 0.581
ENSCAPP00000017432
annotation not available
    
 
 0.580
ENSCAPP00000003804
annotation not available
    
 
 0.569
CST8
Cystatin 8.
    
 
 0.567
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.562
SUFU
SUFU negative regulator of hedgehog signaling.
   
 0.560
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
      
 0.555
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.