ENSCAPP00000001227 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001227

annotation not available (759 aa)

Predicted Functional Partners:

PAM16

0.954

KLHL20

0.931

GRPEL1

0.912

GRPEL2

0.912

ENSCAPP00000008186

0.912

TIMM17A

0.912

TIMM50

0.911

TIMM44

0.904

TIMM17B

0.902

ACTR3B

0.848

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTR3B	ENSCAPP00000001227	ENSCAPP00000011984	ENSCAPP00000001227	Actin related protein 3B.	annotation not available	0.848
ENSCAPP00000001227	ACTR3B	ENSCAPP00000001227	ENSCAPP00000011984	annotation not available	Actin related protein 3B.	0.848
ENSCAPP00000001227	ENSCAPP00000008186	ENSCAPP00000001227	ENSCAPP00000008186	annotation not available	annotation not available	0.912
ENSCAPP00000001227	GRPEL1	ENSCAPP00000001227	ENSCAPP00000001797	annotation not available	GrpE like 1, mitochondrial.	0.912
ENSCAPP00000001227	GRPEL2	ENSCAPP00000001227	ENSCAPP00000007938	annotation not available	GrpE like 2, mitochondrial.	0.912
ENSCAPP00000001227	KLHL20	ENSCAPP00000001227	ENSCAPP00000002174	annotation not available	Kelch like family member 20.	0.931
ENSCAPP00000001227	PAM16	ENSCAPP00000001227	ENSCAPP00000013954	annotation not available	Presequence translocase associated motor 16.	0.954
ENSCAPP00000001227	TIMM17A	ENSCAPP00000001227	ENSCAPP00000011069	annotation not available	Translocase of inner mitochondrial membrane 17A.	0.912
ENSCAPP00000001227	TIMM17B	ENSCAPP00000001227	ENSCAPP00000001367	annotation not available	Translocase of inner mitochondrial membrane 17B.	0.902
ENSCAPP00000001227	TIMM44	ENSCAPP00000001227	ENSCAPP00000013489	annotation not available	Translocase of inner mitochondrial membrane 44.	0.904
ENSCAPP00000001227	TIMM50	ENSCAPP00000001227	ENSCAPP00000017305	annotation not available	Translocase of inner mitochondrial membrane 50.	0.911
ENSCAPP00000008186	ENSCAPP00000001227	ENSCAPP00000008186	ENSCAPP00000001227	annotation not available	annotation not available	0.912
ENSCAPP00000008186	GRPEL1	ENSCAPP00000008186	ENSCAPP00000001797	annotation not available	GrpE like 1, mitochondrial.	0.968
ENSCAPP00000008186	GRPEL2	ENSCAPP00000008186	ENSCAPP00000007938	annotation not available	GrpE like 2, mitochondrial.	0.968
ENSCAPP00000008186	PAM16	ENSCAPP00000008186	ENSCAPP00000013954	annotation not available	Presequence translocase associated motor 16.	0.989
ENSCAPP00000008186	TIMM17A	ENSCAPP00000008186	ENSCAPP00000011069	annotation not available	Translocase of inner mitochondrial membrane 17A.	0.996
ENSCAPP00000008186	TIMM17B	ENSCAPP00000008186	ENSCAPP00000001367	annotation not available	Translocase of inner mitochondrial membrane 17B.	0.995
ENSCAPP00000008186	TIMM44	ENSCAPP00000008186	ENSCAPP00000013489	annotation not available	Translocase of inner mitochondrial membrane 44.	0.995
ENSCAPP00000008186	TIMM50	ENSCAPP00000008186	ENSCAPP00000017305	annotation not available	Translocase of inner mitochondrial membrane 50.	0.997
GRPEL1	ENSCAPP00000001227	ENSCAPP00000001797	ENSCAPP00000001227	GrpE like 1, mitochondrial.	annotation not available	0.912