XCR1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

XCR1

X-C motif chemokine receptor 1. (333 aa)

Predicted Functional Partners:

PSMB11

0.995

ENSCAPP00000008292

0.938

ENSCAPP00000016211

0.938

CXCL9

0.935

CCL5

0.934

CXCL10

0.932

ENSCAPP00000005970

0.929

CCL17

0.928

CCL19

0.927

ENSCAPP00000009827

0.925

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCL17	CCL19	ENSCAPP00000009141	ENSCAPP00000006736	C-C motif chemokine ligand 17.	C-C motif chemokine ligand 19.	0.568
CCL17	CCL5	ENSCAPP00000009141	ENSCAPP00000018110	C-C motif chemokine ligand 17.	C-C motif chemokine ligand 5.	0.998
CCL17	CXCL10	ENSCAPP00000009141	ENSCAPP00000013056	C-C motif chemokine ligand 17.	C-X-C motif chemokine ligand 10.	0.717
CCL17	CXCL9	ENSCAPP00000009141	ENSCAPP00000007982	C-C motif chemokine ligand 17.	C-X-C motif chemokine ligand 9.	0.716
CCL17	ENSCAPP00000005970	ENSCAPP00000009141	ENSCAPP00000005970	C-C motif chemokine ligand 17.	annotation not available	0.979
CCL17	ENSCAPP00000008292	ENSCAPP00000009141	ENSCAPP00000008292	C-C motif chemokine ligand 17.	annotation not available	0.647
CCL17	ENSCAPP00000009827	ENSCAPP00000009141	ENSCAPP00000009827	C-C motif chemokine ligand 17.	annotation not available	0.983
CCL17	ENSCAPP00000016211	ENSCAPP00000009141	ENSCAPP00000016211	C-C motif chemokine ligand 17.	annotation not available	0.661
CCL17	XCR1	ENSCAPP00000009141	ENSCAPP00000001240	C-C motif chemokine ligand 17.	X-C motif chemokine receptor 1.	0.928
CCL19	CCL17	ENSCAPP00000006736	ENSCAPP00000009141	C-C motif chemokine ligand 19.	C-C motif chemokine ligand 17.	0.568
CCL19	CCL5	ENSCAPP00000006736	ENSCAPP00000018110	C-C motif chemokine ligand 19.	C-C motif chemokine ligand 5.	0.637
CCL19	CXCL10	ENSCAPP00000006736	ENSCAPP00000013056	C-C motif chemokine ligand 19.	C-X-C motif chemokine ligand 10.	0.790
CCL19	CXCL9	ENSCAPP00000006736	ENSCAPP00000007982	C-C motif chemokine ligand 19.	C-X-C motif chemokine ligand 9.	0.728
CCL19	ENSCAPP00000005970	ENSCAPP00000006736	ENSCAPP00000005970	C-C motif chemokine ligand 19.	annotation not available	0.440
CCL19	ENSCAPP00000008292	ENSCAPP00000006736	ENSCAPP00000008292	C-C motif chemokine ligand 19.	annotation not available	0.655
CCL19	ENSCAPP00000009827	ENSCAPP00000006736	ENSCAPP00000009827	C-C motif chemokine ligand 19.	annotation not available	0.792
CCL19	ENSCAPP00000016211	ENSCAPP00000006736	ENSCAPP00000016211	C-C motif chemokine ligand 19.	annotation not available	0.954
CCL19	XCR1	ENSCAPP00000006736	ENSCAPP00000001240	C-C motif chemokine ligand 19.	X-C motif chemokine receptor 1.	0.927
CCL5	CCL17	ENSCAPP00000018110	ENSCAPP00000009141	C-C motif chemokine ligand 5.	C-C motif chemokine ligand 17.	0.998
CCL5	CCL19	ENSCAPP00000018110	ENSCAPP00000006736	C-C motif chemokine ligand 5.	C-C motif chemokine ligand 19.	0.637