STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATAT1Alpha tubulin acetyltransferase 1. (275 aa)    
Predicted Functional Partners:
ENSCAPP00000003685
annotation not available
      
 0.689
TTLL1
Tubulin tyrosine ligase like 1.
   
  
 0.684
ENSCAPP00000018587
annotation not available
      
 0.684
C6orf58
Chromosome 6 open reading frame 58.
      
 0.677
NANOS3
Nanos C2HC-type zinc finger 3.
      
 0.676
DHX16
DEAH-box helicase 16.
    
 
 0.649
SIRT2
Sirtuin 2.
      
 0.578
ENSCAPP00000011846
annotation not available
      
 0.573
TBC1D4
TBC1 domain family member 4.
      
 0.572
ELP3
Elongator acetyltransferase complex subunit 3.
      
 0.547
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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