STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A40Solute carrier family 25 member 40. (186 aa)    
Predicted Functional Partners:
CNOT4
CCR4-NOT transcription complex subunit 4.
      
 0.747
RUNDC3B
RUN domain containing 3B.
      
 0.569
ENSCAPP00000008829
annotation not available
      
 0.566
ENSCAPP00000009147
annotation not available
    
   0.565
DLGAP3
DLG associated protein 3.
      
 0.565
PUM2
Pumilio RNA binding family member 2.
    
   0.565
TMEM14C
Transmembrane protein 14C.
   
  
 0.477
CROT
Carnitine O-octanoyltransferase.
      
 0.454
RBM4B
RNA binding motif protein 4B.
      
 0.451
SRRM1
Serine and arginine repetitive matrix 1.
      
 0.446
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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