Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001261annotation not available (718 aa)    
Predicted Functional Partners:
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.967
ENSCAPP00000007441
annotation not available
   
   0.959
CNOT7
CCR4-NOT transcription complex subunit 7.
    
   0.959
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.919
VCL
Vinculin.
    
 
 0.894
PTBP2
Polypyrimidine tract binding protein 2.
   
 0.888
ENSCAPP00000007951
annotation not available
   
 0.880
ENSCAPP00000009605
annotation not available
   
 0.880
TOB2
Transducer of ERBB2, 2.
    
   0.842
TOB1
Transducer of ERBB2, 1.
    
   0.842
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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