ENSCAPP00000001262 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001262

annotation not available (62 aa)

Predicted Functional Partners:

ENSCAPP00000008637

0.999

FXN

0.998

ISCU

0.998

ENSCAPP00000016271

0.990

ENSCAPP00000000571

0.964

MMS19

0.957

SCLY

0.956

BOLA3

0.942

CIAO3

0.934

CIAO1

0.933

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOLA3	CIAO1	ENSCAPP00000006224	ENSCAPP00000015078	bolA family member 3.	Cytosolic iron-sulfur assembly component 1.	0.914
BOLA3	CIAO3	ENSCAPP00000006224	ENSCAPP00000017107	bolA family member 3.	Cytosolic iron-sulfur assembly component 3.	0.895
BOLA3	ENSCAPP00000001262	ENSCAPP00000006224	ENSCAPP00000001262	bolA family member 3.	annotation not available	0.942
BOLA3	ENSCAPP00000008637	ENSCAPP00000006224	ENSCAPP00000008637	bolA family member 3.	annotation not available	0.932
BOLA3	ENSCAPP00000016271	ENSCAPP00000006224	ENSCAPP00000016271	bolA family member 3.	annotation not available	0.818
BOLA3	FXN	ENSCAPP00000006224	ENSCAPP00000003299	bolA family member 3.	Frataxin.	0.950
BOLA3	ISCU	ENSCAPP00000006224	ENSCAPP00000013312	bolA family member 3.	Iron-sulfur cluster assembly enzyme.	0.948
BOLA3	MMS19	ENSCAPP00000006224	ENSCAPP00000010247	bolA family member 3.	MMS19 homolog, cytosolic iron-sulfur assembly component.	0.949
BOLA3	SCLY	ENSCAPP00000006224	ENSCAPP00000002035	bolA family member 3.	Selenocysteine lyase.	0.663
CIAO1	BOLA3	ENSCAPP00000015078	ENSCAPP00000006224	Cytosolic iron-sulfur assembly component 1.	bolA family member 3.	0.914
CIAO1	CIAO3	ENSCAPP00000015078	ENSCAPP00000017107	Cytosolic iron-sulfur assembly component 1.	Cytosolic iron-sulfur assembly component 3.	0.998
CIAO1	ENSCAPP00000001262	ENSCAPP00000015078	ENSCAPP00000001262	Cytosolic iron-sulfur assembly component 1.	annotation not available	0.933
CIAO1	ENSCAPP00000008637	ENSCAPP00000015078	ENSCAPP00000008637	Cytosolic iron-sulfur assembly component 1.	annotation not available	0.976
CIAO1	ENSCAPP00000016271	ENSCAPP00000015078	ENSCAPP00000016271	Cytosolic iron-sulfur assembly component 1.	annotation not available	0.759
CIAO1	FXN	ENSCAPP00000015078	ENSCAPP00000003299	Cytosolic iron-sulfur assembly component 1.	Frataxin.	0.948
CIAO1	ISCU	ENSCAPP00000015078	ENSCAPP00000013312	Cytosolic iron-sulfur assembly component 1.	Iron-sulfur cluster assembly enzyme.	0.979
CIAO1	MMS19	ENSCAPP00000015078	ENSCAPP00000010247	Cytosolic iron-sulfur assembly component 1.	MMS19 homolog, cytosolic iron-sulfur assembly component.	0.999
CIAO1	SCLY	ENSCAPP00000015078	ENSCAPP00000002035	Cytosolic iron-sulfur assembly component 1.	Selenocysteine lyase.	0.680
CIAO3	BOLA3	ENSCAPP00000017107	ENSCAPP00000006224	Cytosolic iron-sulfur assembly component 3.	bolA family member 3.	0.895
CIAO3	CIAO1	ENSCAPP00000017107	ENSCAPP00000015078	Cytosolic iron-sulfur assembly component 3.	Cytosolic iron-sulfur assembly component 1.	0.998