Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RRP7ARibosomal RNA processing 7 homolog A. (261 aa)    
Predicted Functional Partners:
NOL6
Nucleolar protein 6.
   
 0.999
WDR46
WD repeat domain 46.
   
 0.999
UTP6
UTP6 small subunit processome component.
   
 0.999
ENSCAPP00000001291
annotation not available
   
 0.998
MPHOSPH10
M-phase phosphoprotein 10.
   
 0.998
WDR36
WD repeat domain 36.
   
 0.998
BMS1
BMS1 ribosome biogenesis factor.
   
 0.998
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.998
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 0.998
UTP20
UTP20 small subunit processome component.
   
 0.998
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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