STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFRSF25TNF receptor superfamily member 25. (408 aa)    
Predicted Functional Partners:
TNF
Tumor necrosis factor.
    
 0.944
TRADD
TNFRSF1A associated via death domain.
    
 0.928
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.887
LTA
Lymphotoxin alpha.
    
 0.856
ENSCAPP00000004807
annotation not available
    
 0.819
ENSCAPP00000015425
annotation not available
    
 0.807
CYLD
CYLD lysine 63 deubiquitinase.
    
 0.799
RBCK1
RANBP2-type and C3HC4-type zinc finger containing 1.
    
 0.779
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.778
IKBKB
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.778
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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