Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARF1ADP ribosylation factor 1. (181 aa)    
Predicted Functional Partners:
CYTH2
Cytohesin 2.
    
 0.985
ARF5
ADP ribosylation factor 5.
   
  0.949
PLD1
Phospholipase D1.
   
 0.948
COPB1
Coatomer protein complex subunit beta 1.
   
 0.947
CYTH1
Cytohesin 1.
    
 0.935
ARF4
ADP ribosylation factor 4.
   
  0.933
PLD2
Phospholipase D2.
   
 0.932
ENSCAPP00000008222
annotation not available
    
 0.931
COPA
Coatomer protein complex subunit alpha.
   
 0.922
GGA3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3.
    
 0.921
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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