Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAF1PAF1 homolog, Paf1/RNA polymerase II complex component. (391 aa)    
Predicted Functional Partners:
WDR61
WD repeat domain 61.
   
 0.999
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
CDC73
Cell division cycle 73.
   
 0.999
SSRP1
Structure specific recognition protein 1.
   
 0.985
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 0.985
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.978
ENSCAPP00000001157
annotation not available
    
  0.967
CINP
Cyclin dependent kinase 2 interacting protein.
   
 0.962
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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