OTUD7A protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OTUD7A

OTU deubiquitinase 7A. (556 aa)

Predicted Functional Partners:

TRAF6

0.765

UBA52

0.752

ENSCAPP00000010366

0.752

ENSCAPP00000000492

0.735

ENSCAPP00000004155

0.735

ENSCAPP00000014462

0.735

TNF

0.723

TRIP12

0.696

OTULIN

0.676

ENSCAPP00000015762

0.665

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000492	ENSCAPP00000010366	ENSCAPP00000000492	ENSCAPP00000010366	annotation not available	annotation not available	0.991
ENSCAPP00000000492	ENSCAPP00000015762	ENSCAPP00000000492	ENSCAPP00000015762	annotation not available	annotation not available	0.523
ENSCAPP00000000492	OTUD7A	ENSCAPP00000000492	ENSCAPP00000001381	annotation not available	OTU deubiquitinase 7A.	0.735
ENSCAPP00000000492	OTULIN	ENSCAPP00000000492	ENSCAPP00000004605	annotation not available	OTU deubiquitinase with linear linkage specificity.	0.907
ENSCAPP00000000492	TNF	ENSCAPP00000000492	ENSCAPP00000013893	annotation not available	Tumor necrosis factor.	0.526
ENSCAPP00000000492	TRAF6	ENSCAPP00000000492	ENSCAPP00000008546	annotation not available	TNF receptor associated factor 6.	0.956
ENSCAPP00000000492	TRIP12	ENSCAPP00000000492	ENSCAPP00000012593	annotation not available	Thyroid hormone receptor interactor 12.	0.976
ENSCAPP00000000492	UBA52	ENSCAPP00000000492	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.991
ENSCAPP00000004155	ENSCAPP00000010366	ENSCAPP00000004155	ENSCAPP00000010366	annotation not available	annotation not available	0.991
ENSCAPP00000004155	ENSCAPP00000015762	ENSCAPP00000004155	ENSCAPP00000015762	annotation not available	annotation not available	0.523
ENSCAPP00000004155	OTUD7A	ENSCAPP00000004155	ENSCAPP00000001381	annotation not available	OTU deubiquitinase 7A.	0.735
ENSCAPP00000004155	OTULIN	ENSCAPP00000004155	ENSCAPP00000004605	annotation not available	OTU deubiquitinase with linear linkage specificity.	0.907
ENSCAPP00000004155	TNF	ENSCAPP00000004155	ENSCAPP00000013893	annotation not available	Tumor necrosis factor.	0.526
ENSCAPP00000004155	TRAF6	ENSCAPP00000004155	ENSCAPP00000008546	annotation not available	TNF receptor associated factor 6.	0.956
ENSCAPP00000004155	TRIP12	ENSCAPP00000004155	ENSCAPP00000012593	annotation not available	Thyroid hormone receptor interactor 12.	0.976
ENSCAPP00000004155	UBA52	ENSCAPP00000004155	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.991
ENSCAPP00000010366	ENSCAPP00000000492	ENSCAPP00000010366	ENSCAPP00000000492	annotation not available	annotation not available	0.991
ENSCAPP00000010366	ENSCAPP00000004155	ENSCAPP00000010366	ENSCAPP00000004155	annotation not available	annotation not available	0.991
ENSCAPP00000010366	ENSCAPP00000014462	ENSCAPP00000010366	ENSCAPP00000014462	annotation not available	annotation not available	0.993
ENSCAPP00000010366	ENSCAPP00000015762	ENSCAPP00000010366	ENSCAPP00000015762	annotation not available	annotation not available	0.401