ENSCAPP00000001396 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

ENSCAPP00000001396

annotation not available (320 aa)

Predicted Functional Partners:

ENSCAPP00000006614

0.988

HNRNPM

0.986

ENSCAPP00000003691

0.965

ENSCAPP00000014392

0.965

PTBP1

0.963

ENSCAPP00000003525

0.951

ENSCAPP00000002274

0.945

HNRNPAB

0.924

ENSCAPP00000017678

0.924

DDX5

0.921

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSCAPP00000001396	ENSCAPP00000004973	ENSCAPP00000001396	DEAD-box helicase 5.	annotation not available	0.921
DDX5	ENSCAPP00000002274	ENSCAPP00000004973	ENSCAPP00000002274	DEAD-box helicase 5.	annotation not available	0.777
DDX5	ENSCAPP00000003525	ENSCAPP00000004973	ENSCAPP00000003525	DEAD-box helicase 5.	annotation not available	0.923
DDX5	ENSCAPP00000003691	ENSCAPP00000004973	ENSCAPP00000003691	DEAD-box helicase 5.	annotation not available	0.963
DDX5	ENSCAPP00000006614	ENSCAPP00000004973	ENSCAPP00000006614	DEAD-box helicase 5.	annotation not available	0.979
DDX5	ENSCAPP00000014392	ENSCAPP00000004973	ENSCAPP00000014392	DEAD-box helicase 5.	annotation not available	0.963
DDX5	ENSCAPP00000017678	ENSCAPP00000004973	ENSCAPP00000017678	DEAD-box helicase 5.	annotation not available	0.964
DDX5	HNRNPAB	ENSCAPP00000004973	ENSCAPP00000002406	DEAD-box helicase 5.	Heterogeneous nuclear ribonucleoprotein A/B.	0.701
DDX5	HNRNPM	ENSCAPP00000004973	ENSCAPP00000010194	DEAD-box helicase 5.	Heterogeneous nuclear ribonucleoprotein M.	0.926
DDX5	PTBP1	ENSCAPP00000004973	ENSCAPP00000008442	DEAD-box helicase 5.	Polypyrimidine tract binding protein 1.	0.566
ENSCAPP00000001396	DDX5	ENSCAPP00000001396	ENSCAPP00000004973	annotation not available	DEAD-box helicase 5.	0.921
ENSCAPP00000001396	ENSCAPP00000002274	ENSCAPP00000001396	ENSCAPP00000002274	annotation not available	annotation not available	0.945
ENSCAPP00000001396	ENSCAPP00000003525	ENSCAPP00000001396	ENSCAPP00000003525	annotation not available	annotation not available	0.951
ENSCAPP00000001396	ENSCAPP00000003691	ENSCAPP00000001396	ENSCAPP00000003691	annotation not available	annotation not available	0.965
ENSCAPP00000001396	ENSCAPP00000006614	ENSCAPP00000001396	ENSCAPP00000006614	annotation not available	annotation not available	0.988
ENSCAPP00000001396	ENSCAPP00000014392	ENSCAPP00000001396	ENSCAPP00000014392	annotation not available	annotation not available	0.965
ENSCAPP00000001396	ENSCAPP00000017678	ENSCAPP00000001396	ENSCAPP00000017678	annotation not available	annotation not available	0.924
ENSCAPP00000001396	HNRNPAB	ENSCAPP00000001396	ENSCAPP00000002406	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.924
ENSCAPP00000001396	HNRNPM	ENSCAPP00000001396	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.986
ENSCAPP00000001396	PTBP1	ENSCAPP00000001396	ENSCAPP00000008442	annotation not available	Polypyrimidine tract binding protein 1.	0.963