STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001396annotation not available (320 aa)    
Predicted Functional Partners:
ENSCAPP00000006614
annotation not available
   
 0.940
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.931
ENSCAPP00000003691
annotation not available
   
 0.909
ENSCAPP00000014392
annotation not available
   
 0.909
ENSCAPP00000003525
annotation not available
  
0.889
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.872
TRA2B
Transformer 2 beta homolog.
  
 0.858
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.857
ENSCAPP00000002274
annotation not available
   
 0.847
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.833
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.