Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLEC3AC-type lectin domain family 3 member A. (179 aa)    
Predicted Functional Partners:
TRIP4
Thyroid hormone receptor interactor 4.
    
   0.833
ENSCAPP00000002185
annotation not available
    
   0.794
TNC
Tenascin C.
    
  0.692
TNR
Tenascin R.
    
  0.692
TNN
Tenascin N.
    
  0.692
ENSCAPP00000015526
annotation not available
    
 0.646
ENSCAPP00000010791
annotation not available
      
 0.580
VAT1L
Vesicle amine transport 1 like.
    
 
 0.572
SYF2
SYF2 pre-mRNA splicing factor.
      
 0.568
MMP7
Matrix metallopeptidase 7.
    
 0.521
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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