STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001417annotation not available (378 aa)    
Predicted Functional Partners:
PTBP1
Polypyrimidine tract binding protein 1.
   
 
 0.734
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 
 0.727
SNRPA
Small nuclear ribonucleoprotein polypeptide A.
   
   0.724
NUDT21
Nudix hydrolase 21.
   
 
 0.713
FUS
FUS RNA binding protein.
   
 
 0.703
SIN3A
SIN3 transcription regulator family member A.
    
 
 0.672
TOP1
DNA topoisomerase I.
   
   0.666
CDC5L
Cell division cycle 5 like.
   
 
 0.654
HDAC1
Histone deacetylase 1.
   
 
 0.650
CPSF6
Cleavage and polyadenylation specific factor 6.
   
 
 0.631
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.