ENSCAPP00000001423 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

ENSCAPP00000001423

annotation not available (344 aa)

Predicted Functional Partners:

LMNA

0.982

ENSCAPP00000010453

0.938

SUN2

0.937

ENSCAPP00000014504

0.923

CASP6

0.901

ENSCAPP00000006541

0.874

ENSCAPP00000009599

0.867

ENSCAPP00000008067

0.854

SUN1

0.847

LMNB1

0.843

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP6	ENSCAPP00000001423	ENSCAPP00000006130	ENSCAPP00000001423	Caspase 6.	annotation not available	0.901
CASP6	LMNA	ENSCAPP00000006130	ENSCAPP00000014374	Caspase 6.	Lamin A/C.	0.970
CASP6	LMNB1	ENSCAPP00000006130	ENSCAPP00000008136	Caspase 6.	Lamin B1.	0.901
ENSCAPP00000001423	CASP6	ENSCAPP00000001423	ENSCAPP00000006130	annotation not available	Caspase 6.	0.901
ENSCAPP00000001423	ENSCAPP00000006541	ENSCAPP00000001423	ENSCAPP00000006541	annotation not available	annotation not available	0.874
ENSCAPP00000001423	ENSCAPP00000008067	ENSCAPP00000001423	ENSCAPP00000008067	annotation not available	annotation not available	0.854
ENSCAPP00000001423	ENSCAPP00000009599	ENSCAPP00000001423	ENSCAPP00000009599	annotation not available	annotation not available	0.867
ENSCAPP00000001423	ENSCAPP00000010453	ENSCAPP00000001423	ENSCAPP00000010453	annotation not available	annotation not available	0.938
ENSCAPP00000001423	ENSCAPP00000014504	ENSCAPP00000001423	ENSCAPP00000014504	annotation not available	annotation not available	0.923
ENSCAPP00000001423	LMNA	ENSCAPP00000001423	ENSCAPP00000014374	annotation not available	Lamin A/C.	0.982
ENSCAPP00000001423	LMNB1	ENSCAPP00000001423	ENSCAPP00000008136	annotation not available	Lamin B1.	0.843
ENSCAPP00000001423	SUN1	ENSCAPP00000001423	ENSCAPP00000011315	annotation not available	Sad1 and UNC84 domain containing 1.	0.847
ENSCAPP00000001423	SUN2	ENSCAPP00000001423	ENSCAPP00000003867	annotation not available	Sad1 and UNC84 domain containing 2.	0.937
ENSCAPP00000006541	ENSCAPP00000001423	ENSCAPP00000006541	ENSCAPP00000001423	annotation not available	annotation not available	0.874
ENSCAPP00000006541	ENSCAPP00000010453	ENSCAPP00000006541	ENSCAPP00000010453	annotation not available	annotation not available	0.997
ENSCAPP00000006541	ENSCAPP00000014504	ENSCAPP00000006541	ENSCAPP00000014504	annotation not available	annotation not available	0.959
ENSCAPP00000006541	LMNA	ENSCAPP00000006541	ENSCAPP00000014374	annotation not available	Lamin A/C.	0.964
ENSCAPP00000006541	LMNB1	ENSCAPP00000006541	ENSCAPP00000008136	annotation not available	Lamin B1.	0.874
ENSCAPP00000008067	ENSCAPP00000001423	ENSCAPP00000008067	ENSCAPP00000001423	annotation not available	annotation not available	0.854
ENSCAPP00000008067	LMNA	ENSCAPP00000008067	ENSCAPP00000014374	annotation not available	Lamin A/C.	0.717