Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHDHCholine dehydrogenase. (438 aa)    
Predicted Functional Partners:
ALDH7A1
Aldehyde dehydrogenase 7 family member A1.
  
 
 0.956
IFT57
Intraflagellar transport 57.
   
 0.954
ENSCAPP00000016241
annotation not available
    
 0.953
ENSCAPP00000008520
annotation not available
   
 
 0.952
IFT22
Intraflagellar transport 22.
    
 0.948
TTC26
Tetratricopeptide repeat domain 26.
    
 0.947
IFT81
Intraflagellar transport 81.
    
 0.947
IFT172
Intraflagellar transport 172.
    
 0.947
ENSCAPP00000008760
annotation not available
    
 0.945
IFT88
Intraflagellar transport 88.
   
 0.945
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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