STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMBRA1Autophagy and beclin 1 regulator 1. (1279 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.983
CUL4A
Cullin 4A.
    
 0.982
DDA1
DET1 and DDB1 associated 1.
    
 0.978
ENSCAPP00000005383
annotation not available
    
 0.973
TRAF6
TNF receptor associated factor 6.
    
 0.940
RBX1
Ring-box 1.
    
 0.939
DCAF7
DDB1 and CUL4 associated factor 7.
    
  0.936
ULK1
Unc-51 like autophagy activating kinase 1.
   
 0.935
DCAF1
DDB1 and CUL4 associated factor 1.
   
 
  0.934
ENSCAPP00000006835
annotation not available
    
  0.934
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.