STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001463annotation not available (261 aa)    
Predicted Functional Partners:
ENSCAPP00000004047
annotation not available
   
 0.783
PTPRC
Protein tyrosine phosphatase receptor type C.
   
 0.751
PTPN6
Protein tyrosine phosphatase non-receptor type 6.
   
 0.724
PTPN11
Protein tyrosine phosphatase non-receptor type 11.
   
 0.702
LRIT3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.671
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.671
NCAM1
Neural cell adhesion molecule 1.
    
 0.657
HLA-DOA
Major histocompatibility complex, class II, DO alpha.
   
  0.647
ENSCAPP00000016091
annotation not available
    
 0.629
ENSCAPP00000005147
annotation not available
    
  0.620
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.