Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNASE13Ribonuclease A family member 13 (inactive). (157 aa)    
Predicted Functional Partners:
PATE2
Prostate and testis expressed 2.
   
  
 0.700
PATE3
Prostate and testis expressed 3.
      
 0.689
PATE1
Prostate and testis expressed 1.
      
 0.688
ENSCAPP00000001192
annotation not available
      
 0.571
INTS10
Integrator complex subunit 10.
      
 0.568
ZC3H12D
Zinc finger CCCH-type containing 12D.
      
 0.500
PCBP4
poly(rC) binding protein 4.
      
 0.484
PCF11
PCF11 cleavage and polyadenylation factor subunit.
      
 0.484
ENSCAPP00000003504
annotation not available
      
 0.410
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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