Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM29Tripartite motif containing 29. (557 aa)    
Predicted Functional Partners:
RUVBL2
RuvB like AAA ATPase 2.
    
 
 0.780
TRIM32
Tripartite motif containing 32.
    
 0.671
TRAT1
T cell receptor associated transmembrane adaptor 1.
      
 0.667
DDX58
DExD/H-box helicase 58.
    
 0.649
TRIM35
Tripartite motif containing 35.
  
 
 
 0.644
RIPK4
Receptor interacting serine/threonine kinase 4.
   
 0.627
ICOS
Inducible T cell costimulator.
    
 0.595
TRIM9
Tripartite motif containing 9.
    
 
 0.577
ENSCAPP00000008774
annotation not available
    
  0.576
HINT2
Histidine triad nucleotide binding protein 2.
    
 
 0.575
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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