Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFEMP1EGF containing fibulin extracellular matrix protein 1. (416 aa)    
Predicted Functional Partners:
SGTA
Small glutamine rich tetratricopeptide repeat containing alpha.
    
  0.906
RIC8A
RIC8 guanine nucleotide exchange factor A.
    
   0.884
FBLN2
Fibulin 2.
   
 0.857
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.787
BAG6
BCL2 associated athanogene 6.
    
   0.767
FKBP10
FKBP prolyl isomerase 10.
   
 
 0.674
COL6A2
Collagen type VI alpha 2 chain.
   
 0.655
HSPA5
Heat shock protein family A (Hsp70) member 5.
    
 0.652
ENSCAPP00000010521
annotation not available
   
 
 0.639
ECM1
Extracellular matrix protein 1.
   
 
 0.637
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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