Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLC6A1Solute carrier family 6 member 1. (601 aa)    
Predicted Functional Partners:
TM4SF4
Transmembrane 4 L six family member 4.
    
 
 0.964
SLC1A3
Solute carrier family 1 member 3.
  
 
 0.914
SLC6A12
Solute carrier family 6 member 12.
   
 
  0.879
SLC1A6
Solute carrier family 1 member 6.
  
 
 0.875
SLC6A11
Solute carrier family 6 member 11.
   
 
  0.870
SLC6A13
Solute carrier family 6 member 13.
   
 
  0.870
SLC1A7
Solute carrier family 1 member 7.
    
 0.865
SLC6A7
Solute carrier family 6 member 7.
   
 
  0.861
STX1B
Syntaxin 1B.
   
 0.850
STX1A
Syntaxin 1A.
   
 0.843
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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