Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBCK1RANBP2-type and C3HC4-type zinc finger containing 1. (504 aa)    
Predicted Functional Partners:
ENSCAPP00000015425
annotation not available
   
 0.999
OTULIN
OTU deubiquitinase with linear linkage specificity.
    
 0.998
RIPK1
Receptor interacting serine/threonine kinase 1.
   
 0.991
TNF
Tumor necrosis factor.
    
 0.980
TRAF1
TNF receptor associated factor 1.
   
 0.977
TRAF2
TNF receptor associated factor 2.
   
 0.970
FKBPL
FKBP prolyl isomerase like.
    
 0.964
NOD2
Nucleotide binding oligomerization domain containing 2.
    
 
 0.960
ENSCAPP00000000972
annotation not available
    
 0.953
ENSCAPP00000008606
annotation not available
    
 0.953
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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