Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THBS3Thrombospondin 3. (816 aa)    
Predicted Functional Partners:
SDC4
Syndecan 4.
    
 0.938
ITGA8
Integrin subunit alpha 8.
    
 0.930
ITGB5
Integrin subunit beta 5.
    
 0.929
ITGA10
Integrin subunit alpha 10.
    
 0.928
ENSCAPP00000016185
annotation not available
    
 0.925
ITGB4
Integrin subunit beta 4.
    
 0.924
ITGB1
Integrin subunit beta 1.
    
 0.922
ITGA2B
Integrin subunit alpha 2b.
    
 0.922
ITGB6
Integrin subunit beta 6.
    
 0.922
ITGA6
Integrin subunit alpha 6.
    
 0.922
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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