STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNRPNSmall nuclear ribonucleoprotein polypeptide N. (243 aa)    
Predicted Functional Partners:
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
   
 0.999
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.998
ENSCAPP00000015900
annotation not available
    
 0.997
ENSCAPP00000001161
annotation not available
   
 0.996
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 0.996
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.996
ENSCAPP00000013546
annotation not available
   
 0.996
ENSCAPP00000017572
annotation not available
    
 0.996
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.