Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAPN3Calpain 3. (772 aa)    
Predicted Functional Partners:
CAPN12
Calpain 12.
    
  0.927
ENSCAPP00000015910
annotation not available
   
 0.918
CAPNS1
Calpain small subunit 1.
   
 0.900
ENSCAPP00000003308
annotation not available
   
 0.896
ENSCAPP00000015741
annotation not available
   
 0.896
CAPN6
Calpain 6.
    
 0.873
CAPN5
Calpain 5.
    
 0.865
MYOT
Myotilin.
   
  
 0.786
DYSF
Dysferlin.
      
 0.741
PIGS
Phosphatidylinositol glycan anchor biosynthesis class S.
     
  0.735
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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