STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHST1Carbohydrate sulfotransferase 1. (411 aa)    
Predicted Functional Partners:
ENSCAPP00000006551
annotation not available
   
  0.847
CHST4
Carbohydrate sulfotransferase 4.
   
  0.847
ENSCAPP00000005249
annotation not available
   
 0.842
LUM
Lumican.
     
 0.744
KERA
Keratocan.
     
 0.732
GCNT1
Glucosaminyl (N-acetyl) transferase 1.
      
 0.687
GAREM1
GRB2 associated regulator of MAPK1 subtype 1.
      
 0.667
FAM167A
Family with sequence similarity 167 member A.
      
 0.617
PIBF1
Progesterone immunomodulatory binding factor 1.
      
 0.583
SH3BP4
SH3 domain binding protein 4.
      
 0.573
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.