Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBE2BUbiquitin conjugating enzyme E2 B. (80 aa)    
Predicted Functional Partners:
RNF20
Ring finger protein 20.
    
 0.998
RNF40
Ring finger protein 40.
    
 0.998
RAD18
RAD18 E3 ubiquitin protein ligase.
    
 0.995
UBA1
Ubiquitin like modifier activating enzyme 1.
   
 0.983
UBR2
Ubiquitin protein ligase E3 component n-recognin 2.
    
 0.978
PCNA
Proliferating cell nuclear antigen.
    
 0.977
ENSCAPP00000008620
annotation not available
    
 0.967
ENSCAPP00000002614
annotation not available
    
 0.965
UBE2V2
Ubiquitin conjugating enzyme E2 V2.
    
 0.963
H2BC18
H2B clustered histone 18.
    
 0.957
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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