STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D1TBC1 domain family member 1. (1164 aa)    
Predicted Functional Partners:
RAB14
RAB14, member RAS oncogene family.
    
 0.873
RAB8A
RAB8A, member RAS oncogene family.
    
 0.871
ENSCAPP00000006409
annotation not available
    
 0.862
RAB10
RAB10, member RAS oncogene family.
    
 0.846
RAB2A
RAB2A, member RAS oncogene family.
    
 0.840
PRKAA1
Protein kinase AMP-activated catalytic subunit alpha 1.
     
 0.826
PRKAA2
Protein kinase AMP-activated catalytic subunit alpha 2.
     
 0.817
PRKAG3
Protein kinase AMP-activated non-catalytic subunit gamma 3.
     
 0.807
PRKAG2
Protein kinase AMP-activated non-catalytic subunit gamma 2.
     
 0.806
ENSCAPP00000005436
annotation not available
    
 0.802
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.