Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIMS3Regulating synaptic membrane exocytosis 3. (250 aa)    
Predicted Functional Partners:
RAPGEF4
Rap guanine nucleotide exchange factor 4.
   
 0.922
TSPOAP1
TSPO associated protein 1.
    
 0.871
RIMBP2
RIMS binding protein 2.
    
 0.871
ENSCAPP00000006556
annotation not available
   
 0.858
UNC13C
Unc-13 homolog C.
   
 0.854
UNC13B
Unc-13 homolog B.
   
 0.854
ERC1
ELKS/RAB6-interacting/CAST family member 1.
    
 
 0.762
ERC2
ELKS/RAB6-interacting/CAST family member 2.
    
 
 0.762
RAB3A
RAB3A, member RAS oncogene family.
   
 0.761
RAB3C
RAB3C, member RAS oncogene family.
   
 0.760
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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