Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAF8SR-related CTD associated factor 8. (897 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.982
ENSCAPP00000000434
annotation not available
   
 0.962
ENSCAPP00000002198
annotation not available
   
 0.957
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.949
CPSF7
Cleavage and polyadenylation specific factor 7.
   
 0.948
CPSF6
Cleavage and polyadenylation specific factor 6.
   
 0.923
SCAF4
SR-related CTD associated factor 4.
   
  
 0.920
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.911
ENSCAPP00000001157
annotation not available
   
 
 0.907
NUDT21
Nudix hydrolase 21.
     
 0.905
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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