STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001625annotation not available (1251 aa)    
Predicted Functional Partners:
ENSCAPP00000017057
annotation not available
 
      0.900
CCDC28A
Coiled-coil domain containing 28A.
    
   0.810
ENSCAPP00000014833
annotation not available
    
 
 0.803
ENSCAPP00000012893
annotation not available
    
   0.622
TMEM170A
Transmembrane protein 170A.
    
   0.533
ALG8
ALG8 alpha-1,3-glucosyltransferase.
    
   0.518
RNF20
Ring finger protein 20.
    
   0.488
RNF40
Ring finger protein 40.
    
   0.488
ALS2CL
ALS2 C-terminal like.
    
 
 0.484
ENSCAPP00000002089
annotation not available
   
   0.479
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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