Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RER1Retention in endoplasmic reticulum sorting receptor 1. (196 aa)    
Predicted Functional Partners:
CANX
Calnexin.
    
 
 0.895
ENSCAPP00000007856
annotation not available
    
   0.839
ENSCAPP00000001689
annotation not available
   
 
 0.835
DDOST
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit.
   
   0.828
COPB2
Coatomer protein complex subunit beta 2.
   
 
 0.815
BCAP31
B cell receptor associated protein 31.
   
 
 0.809
ATP5PD
ATP synthase peripheral stalk subunit d.
   
   0.793
SURF4
Surfeit 4.
   
 
 0.762
KDELR1
KDEL endoplasmic reticulum protein retention receptor 1.
   
 
 0.761
KDELR3
KDEL endoplasmic reticulum protein retention receptor 3.
   
 
 0.761
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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