STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SOX6SRY-box transcription factor 6. (761 aa)    
Predicted Functional Partners:
ENSCAPP00000004002
annotation not available
   
 
 0.992
CTNNB1
Catenin beta 1.
   
 0.949
SOX13
SRY-box transcription factor 13.
    
 
 0.917
TRIP12
Thyroid hormone receptor interactor 12.
    
 
 0.795
ENSCAPP00000000800
annotation not available
    
 
 0.697
DMRT1
Doublesex and mab-3 related transcription factor 1.
    
 
 0.690
ENSCAPP00000006020
annotation not available
    
 
 0.684
JUP
Junction plakoglobin.
   
 0.669
DNAJB1
DnaJ heat shock protein family (Hsp40) member B1.
      
 0.658
COL2A1
Collagen type II alpha 1 chain.
    
 
 0.657
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.