ENSCAPP00000001665 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001665

annotation not available (109 aa)

Predicted Functional Partners:

COX10

0.990

ENSCAPP00000003131

0.972

SURF1

0.942

ENSCAPP00000016664

0.933

ENSCAPP00000000351

0.929

ENSCAPP00000008343

0.923

ENSCAPP00000012999

0.921

SCO1

0.916

SCO2

0.912

TIMM8A

0.906

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX10	ENSCAPP00000000351	ENSCAPP00000008273	ENSCAPP00000000351	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	annotation not available	0.955
COX10	ENSCAPP00000001665	ENSCAPP00000008273	ENSCAPP00000001665	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	annotation not available	0.990
COX10	ENSCAPP00000003131	ENSCAPP00000008273	ENSCAPP00000003131	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	annotation not available	0.998
COX10	ENSCAPP00000008343	ENSCAPP00000008273	ENSCAPP00000008343	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	annotation not available	0.957
COX10	ENSCAPP00000012999	ENSCAPP00000008273	ENSCAPP00000012999	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	annotation not available	0.964
COX10	SCO1	ENSCAPP00000008273	ENSCAPP00000016093	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	SCO cytochrome c oxidase assembly protein 1.	0.682
COX10	SCO2	ENSCAPP00000008273	ENSCAPP00000000526	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	SCO cytochrome c oxidase assembly protein 2.	0.682
COX10	SURF1	ENSCAPP00000008273	ENSCAPP00000005330	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	SURF1 cytochrome c oxidase assembly factor.	0.915
ENSCAPP00000000351	COX10	ENSCAPP00000000351	ENSCAPP00000008273	annotation not available	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	0.955
ENSCAPP00000000351	ENSCAPP00000001665	ENSCAPP00000000351	ENSCAPP00000001665	annotation not available	annotation not available	0.929
ENSCAPP00000000351	ENSCAPP00000003131	ENSCAPP00000000351	ENSCAPP00000003131	annotation not available	annotation not available	0.958
ENSCAPP00000000351	ENSCAPP00000008343	ENSCAPP00000000351	ENSCAPP00000008343	annotation not available	annotation not available	0.999
ENSCAPP00000000351	ENSCAPP00000012999	ENSCAPP00000000351	ENSCAPP00000012999	annotation not available	annotation not available	0.999
ENSCAPP00000000351	ENSCAPP00000016664	ENSCAPP00000000351	ENSCAPP00000016664	annotation not available	annotation not available	0.916
ENSCAPP00000000351	SCO1	ENSCAPP00000000351	ENSCAPP00000016093	annotation not available	SCO cytochrome c oxidase assembly protein 1.	0.790
ENSCAPP00000000351	SCO2	ENSCAPP00000000351	ENSCAPP00000000526	annotation not available	SCO cytochrome c oxidase assembly protein 2.	0.790
ENSCAPP00000000351	SURF1	ENSCAPP00000000351	ENSCAPP00000005330	annotation not available	SURF1 cytochrome c oxidase assembly factor.	0.782
ENSCAPP00000000351	TIMM8A	ENSCAPP00000000351	ENSCAPP00000011173	annotation not available	Translocase of inner mitochondrial membrane 8A.	0.457
ENSCAPP00000001665	COX10	ENSCAPP00000001665	ENSCAPP00000008273	annotation not available	Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.	0.990
ENSCAPP00000001665	ENSCAPP00000000351	ENSCAPP00000001665	ENSCAPP00000000351	annotation not available	annotation not available	0.929